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Genetic Study

Green turtle mtDNA sequences

To facilitate haplotype designations and avoid confusion among ocean basins, we are using the nomenclature of CMP# for the Pacific. Check also sequences posted for the Atlantic on the Archie Carr Center websiteThe previous link is a link to Non-Federal government web site. Click to review NOAA Fisheries disclaimer.

Turtle-dna-logo.jpgIf you have a new sequence from the Pacific or Indian Ocean please email it toPeter.Dutton@noaa.govand we will confirm the status of the sequence and assign a new sequence designation number. Sequences will not be posted on the website until the researcher who is the source of the new sequence gives permission.

It is the responsibility of the author of the new sequence to submit their sequence to GENBANK ( http://www.ncbi.nlm.nih.gov).

The table below summarizes the named haplotypes for Pacific and Indian Ocean green turtles with GENBANK Accession numbers and references. Contributed sequences are variable lengths, but haplotypes listed here are based on alignment with the 384bp fragment as first reported in Norman et al. (1994).

 

CM sequence designation Other name(s) GenBank Accession Number Reference
CmP1 D6 AY540055 Dutton et al. Unpublished
CmP2 HAPC AY540056 Dutton et al. Unpublished
CmP3 HAPD AY540057 Dutton et al. Unpublished
CmP4 D4 AY382323 Dutton et al. Unpublished
CmP5 AY382324 Dutton et al. Unpublished
CmP7 HAPH AY382325 Dutton et al. Unpublished
CmP8 HAPI AY382326 Dutton et al. Unpublished
CmP9 AY540058 Dutton et al. Unpublished
CmP10 AY540059 Dutton et al. Unpublished
CmP11 AY540060 Dutton et al. Unpublished
CmP12 HAPM AY382327 Dutton et al. Unpublished
CmP13 AY540061 Dutton et al. Unpublished
CmP14 AY540062 Dutton et al. Unpublished
CmP15 AY540063 Dutton et al. Unpublished
CmP16 AY540064 Dutton et al. Unpublished
CmP17 AY540065 Dutton et al. Unpublished
CmP18 CMTWA AY540066 Dutton et al. Unpublished
CmP19 CMTWC AY540067 Dutton et al. Unpublished
CmP20 A3 AY540068 Dutton et al. Unpublished
CmP21 AY540069 Dutton et al. Unpublished
CmP22 FIJC AY540070 Dutton et al. Unpublished
CmP23 FPA NA Norman et al. 1994
CmP24 AY540071 Dutton et al. Unpublished
CmP30 FIJD NA Dutton et al. Unpublished
CmP31 FIJE NA Dutton et al. Unpublished
CmP32 FIJF NA Dutton et al. Unpublished
CmP33 FIJG NA Dutton et al. Unpublished
CmP34 FIJH NA Dutton et al. Unpublished
CmP35 FPB NA Norman et al. 1994
CmP36 GOC, JVAa NA Norman et al. 1994
CmP37 JPNA NA Norman et al. 1994
CmP38 JPNB NA Norman et al. 1994
CmP39 JPNC NA Dutton et al. Unpublished
CmP40 JPND, C5 AY955209 Dethmers et al
CmP42 JVAb NA Norman et al. 1994
CmP43 LAC NA Norman et al. 1994
CmP44 NCBR, B1 NA Norman et al. 1994
CmP45 NWC NA Norman et al. 1994
CmP46 PNG NA Norman et al. 1994
CmP47 SGBR, A2 NA Norman et al. 1994
CmP48 SWK NA Norman et al. 1994
CmP49 TIN, C3, Ind1 AY955204 Dethmers et al. 2006
CmP50 TWD, No. 10 Zamami NA Dutton et al. Unpublished
CmP51 TWE NA Dutton et al. Unpublished
CmP52 No. 33 Zamami NA Tanaka, Unpublished
CmP53 NA Dutton et al. Unpublished
CmP55 NA Dutton et al. Unpublished
CmP56 NA Dutton et al. Unpublished
CmP57 D2, Ind2 AY955205 Dethmers et al. 2006
CmP59 D5 U40659 Dutton et al. 1996
CmP60 E1a AY955217 Dethmers et al. 2006
CmP61 E2a AY955216 Dethmers et al. 2006
CmP62 H1, CMOM3 AJ831526 Alansari Unpublished
CmP63 H2 NA D. Broderick, Unpublished
CmP64 H3 NA D. Broderick, Unpublished
CmP65 I NA D. Broderick, Unpublished
CmP66 J1 AY955198 Dethmers et al. 2006
CmP67 J14212, A6 AY955221 Dethmers et al. 2006
CmP68 J2 AY955199 Dethmers et al. 2006
CmP69 JpnE NA Dutton et al. Unpublished
CmP70 JpnF NA Dutton et al. Unpublished
CmP71 L1, CMOM4 AJ831527 Alansari Unpublished
CmP72 L2, CMOM2 AJ831525 Alansari Unpublished
CmP73 M, CMOM1 AJ831524 Alansari Unpublished
CmP74 U40436 Dutton et al. 1996
CmP75 Ind3 AF529030 Formia et al. 2006
CmP76 A1 AY955215 Dethmers et al. 2006
CmP77 A4 AY955220 Dethmers et al. 2006
CmP78 A5 NA D. Broderick, Unpublished
CmP79 B2 NA D. Broderick, Unpublished
CmP80 B3 AY955214 Dethmers et al. 2006
CmP81 B4 AY955213 Dethmers et al. 2006
CmP82 B5 AY955200 Dethmers et al. 2006
CmP83 C1 AY955201 Dethmers et al. 2006
CmP84 C12 AY955211 Dethmers et al. 2006
CmP85 C13 AY955212 Dethmers et al. 2006
CmP86 C2 AY955203 Dethmers et al. 2006
CmP87 C4 AY955207 Dethmers et al. 2006
CmP88 C7 AY955210 Dethmers et al. 2006
CmP89 C8 AY955208 Dethmers et al. 2006
CmP90 C9 AY955202 Dethmers et al. 2006
CmP91 Caru, C14 AY955206 Dethmers et al. 2006
CmP92 NA Dutton et al. Unpublshed
CmP93 NA Dutton et al. Unpublshed
CmP94 NA Dutton et al. Unpublshed
CmP95 NA Dutton et al. Unpublshed
CmP96 NA Dutton et al. Unpublshed
CmP97 NA Dutton et al. Unpublshed
CmP98 NA Dutton et al. Unpublshed

 

References

Dethmers KEM, Broderick D, Moritz C, Fitzsimmons NN, Limpus CJ, Lavery S, Whiting S, Guinea M, Prince RIT, Kennett R (2006) The genetic structure of Australasian green turtles (Chelonia mydas): exploring the geographical scale of genetic exchange. Molecular Ecology 15:3931-3946

Formia A, Godley BJ, Dontaine J-F, Bruford MW (2006) Mitochondrial DNA diversity and phylogeography of endangered green turtle (Chelonia mydas) populations in Africa. Conservation Genetics 7:353-369

Norman JA, Moritz C, Limpus CJ (1994) Mitochondrial DNA control region polymorphisms: genetic markers for ecological studies of marine turtles. Molecular Ecology 3:363-373

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